FULL ARTICLES [* lead author]

Bueno M, Camacho CJ*, Sancho J*
SIMPLE estimate of the free energy change due to aliphatic mutations: superior predictions based on first principles
Prasad JC, Goldstone JV, Camacho CJ, Vajda S, Stegeman JJ
Ensemble Modeling of Substrate Binding to Cytochromes P450: Analysis of Catalytic Differences Between CYP1A Orthologs
Biochemistry 2007.
Iyer AKV, Tran KT, Borysenko CW, Cascio M, Camacho CJ, Blair HC, Bahar I, Wells A
Tenascin Cytotactin Epidermal Growth Factor-Like Repeat Binds Epidermal Growth Factor Receptor with Low Affinity
J. Cell Phys. 2007.
Camacho CJ*, Ma H, Champ PC
Scoring a diverse set of high-quality docked conformations: a metascore based on electrostatic and desolvation interactions
Proteins 2006 Jun 1;63(4):868-77.
Kozakov D, Clodfelter KH, Vajda S, Camacho* CJ
Optimal clustering for detecting near native conformations in protein docking
Biophys. J. Aug;89(2):867-75.
Camacho CJ
Modeling side chains using molecular dynamics improve recognition of bining region in CAPRI targets
Proteins 2005; 60: 245-251.
Comeau S, Vajda S, Camacho* CJ
Performance of the first protein docking server ClusPro in CAPRI rounds3-5
Proteins 2005; 60: 239-244.
Camacho CJ, Zhang C
FastContact: rapid estimate of contact and binding free energies
Bioinformatics 2005; 21: 2534-2536.
Comeau SR, Camacho* CJ
Predicting oligomeric assemblies: N-mers a primer
J. Struct. Biol. 2005; 150: 233-244.
Rajamani D, Thiel S, Vajda S, Camacho* CJ
Anchor residues in protein-protein interactions
Proc. Natl. Acad. Sci. USA 2004; 101: 11287-11292
Prasad JC, Vajda S, Camacho* CJ
Consensus alignment server for reliable comparative modeling with distant templates
Nucleic Acid Res. 2004; 32 W50-54.
Comeau SR, Gatchell D, Vajda S, Camacho* CJ
ClusPro: A Fully-Automated Algorithm for Protein-Protein Docking
Nucleic Acid Res. 2004; 32 W96-99.
Vajda S, Camacho CJ
Protein-protein docking: is the glass half full or half empty?
Trends in Biotechnology 2004; 22 110-116.
Comeau SR, Gatchell D, Vajda S, Camacho* CJ
ClusPro: An automated docking and discrimination method for the prediction of protein complexes
Bioinformatics 2004 Jan; 20(1): 45-50.
Camacho* CJ, Gatchell D.
Successful discrimination of protein interactions.
Proteins 2003 Jul; 52(1):92-97.
Prasad JC, Comeau SR, Vajda S, Camacho* CJ
Consensus alignment for reliable framework prediction in homology modeling.
Bioinformatics 2003 Sept; 19(13) 1682-1691.
Camacho CJ, Vajda S.
Protein-protein association kinetics and protein docking.
Curr Opin Struct Biol 2002 Feb;12(1):36-40
Camacho* CJ, Vajda S.
Protein docking along smooth association pathways.
Proc Natl Acad Sci U S A 2001 Sep 11;98(19):10636-41
Kimura SR, Brower RC, Vajda S, Camacho* CJ.
Dynamical view of the positions of key side chains in protein-protein recognition.
Biophys J. 2001 Feb;80(2):635-42.
Yanai I, Camacho* CJ, DeLisi C.
Predictions of gene family distributions in microbial genomes: Evolution by gene duplication and modification.
Physical Review Letters 2000 85:2641-2644.
Camacho* CJ, DeLisi C, Vajda S
Thermodynamic maps of receptor-ligand pairs reveal how some proteins bind.
in The thermodynamics of the drug-receptor interaction, edited by R.B. Raffa, Wiley (2000), 1-15.
Camacho CJ, Gatchell DW, Kimura SR, Vajda S
Scoring docked conformations generated by rigid body protein-protein docking.
Proteins: Structure, Function, and Genetics 2000 40:525-537.
Dennis S, Camacho CJ, Vajda S
Exploring potential solvation sites of proteins by multistart local minimization.
in Optimization in Computational Chemistry and Molecular Biology, edited by C.A. Floudas and P.M. Pardalos, Kluwer Academic Publishers (2000), 1-19.
Dennis S, Camacho CJ, Vajda S
Continuum Electrostatic Analysis of Preferred Solvation Sites around Proteins in Solution.
Proteins: Structure, Function, and Genetics 2000 38:176-188
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Camacho* CJ, Kimura SR, DeLisi C, Vajda S
Kinetics of desolvation-mediated protein-protein binding.
Biophys J 2000 Mar;78(3):1094-1105
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Camacho* CJ, Weng Z, Vajda S, DeLisi C
Free energy landscapes of encounter complexes in protein-protein association.
Biophys J 1999 Mar;76(3):1166-78
Camacho CJ
Chain Length Scaling of Protein Folding Time.
Phys. Rev. Lett., 80:207 (1998).
Camacho CJ
Entropic Barriers, Frustration, and Order: Basic Ingredients in Protein Folding.
Phys. Rev. Lett., 77:2324-2328 (1996).
Bellissard J, Camacho CJ, Barelli A, Claro F
Random Walk Distributions using Noncommutative Geometries.
J. Phys. A, 30:L707-L709 (1997).
Camacho* CJ, Schanke T
From Collapse to Freezing in Random Heteropolymers.
Europhysics Letters, 37:603-608 (1997).
Camacho CJ, Thirumalai D
Denaturants can accelerate folding rates in a class of globular proteins.
Protein Sci. 1996 Sep;5(9):1826-32.
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Camacho CJ, Thirumalai D
A Criterion that Determines Fast Folding of Proteins: a Model Study.
Europhysics Letters, 35:627-632 (1996).
Camacho CJ, Thirumalai D
Modeling the role of disulfide bonds in protein folding: entropic barriers and pathways.
Proteins. 1995 May;22(1):27-40.
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Camacho CJ, Thirumalai D
Theoretical predictions of folding pathways by using the proximity rule, with applications to bovine pancreatic trypsin inhibitor.
Proc Natl Acad Sci U S A. 1995 Feb 28;92(5):1277-81.
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Camacho CJ, Thirumalai D
Kinetics and thermodynamics of folding in model proteins.
Proc Natl Acad Sci U S A. 1993 Jul 1;90(13):6369-72.
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Camacho CJ, Thirumalai D
Minimum energy compact structures in random sequences of heteropolymers.
Phys. Rev. Lett. 71:2505-2508 (1993).
Camacho CJ, M. E. Fisher and J. P. Straley
Crossover from Rods to Self-avoiding Walks to Trees in Two Dimensions.
Phys. Rev. A, 46:6300-6310 (1992).
Camacho CJ, M. E. Fisher
Simulations of planar vesicles and their transitions.
in Computer Simulation Studies in Condensed Matter Physics IV, ed. by D. P. Landau, K. K. Mon and H. B. Schuttler (1993).
Camacho CJ, M. E. Fisher and R. R. P. Singh
Semiflexible planar polymeric loops.
J. Chem. Phys. 94:5693-5700 (1991).
Camacho CJ, M. E. Fisher
Tunable fractal shapes in self-avoiding polygons and planar vesicles.
Phys. Rev. Lett. 65:9-12 (1990).
A. C. Maggs, S. Leibler, M. E. Fisher and C.J.Camacho
Size of an inflated vesicle in two dimensions.
Phys. Rev. A 42:691-695 (1990).
C.J.Camacho and F. Lund
Generation of solitons in non-integrable systems.
in Nonlinear evolution equations: Integrability and spectral methods, edited by Degasperis, Fordy and Lakshmanan, Manchester University Press (1990), 483-495.
C.J.Camacho, J. Lomnitz-Adler and F. Lund
Approximate modelling of accelerograms: Theory and applications.
in Quintas Jornadas Chilenas de Sismologia e Ingenieria Antisismica, ed. by Ministerio de Vivienda y Urbanismo, Santiago (1989), 399-404.
C.J.Camacho and F. Lund
Inelastic scattering of Toda solitons by an interface.
Physica D, 26:379-384 (1987).
C.J.Camacho and F. Lund
Generation of Boussinesq solitons via boundary conditions.
Phys. Lett A, 108:1-3 (1985).